1FLM image
Deposition Date 1999-03-10
Release Date 2000-03-06
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1FLM
Title:
DIMER OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.18
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (FMN-BINDING PROTEIN)
Gene (Uniprot):DvMF_2023
Chain IDs:A, B
Chain Length:122
Number of Molecules:2
Biological Source:Desulfovibrio vulgaris str. 'Miyazaki F'
Ligand Molecules
Primary Citation
How do the x-ray structure and the NMR structure of FMN-binding protein differ?
Acta Crystallogr.,Sect.D 56 368 371 (2000)
PMID: 10713530 DOI: 10.1107/S0907444900000111

Abstact

The crystal structure of FMN-binding protein (FMN-bp) from Desulfovibrio vulgaris Miyazaki F was solved by the multiple isomorphous replacement method and refined to an R factor of 15.1% at 1.3 A resolution. FMN-bp exists in a dimeric form in the crystal, in contrast to the monomeric structure determined by NMR. R.m.s. deviations between the crystal structure and the solution structure are more than 2 A, which implies significant differences. There are some hydrophobic residues in the interface between the two monomers. In particular, Leu122 in the C-terminus has a close contact with the o-xylene moiety of FMN, while solvent molecules may cover the o-xylene moiety in the solution structure.

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Primary Citation of related structures