1F9E image
Deposition Date 2000-07-10
Release Date 2001-07-10
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1F9E
Title:
CASPASE-8 SPECIFICITY PROBED AT SUBSITE S4: CRYSTAL STRUCTURE OF THE CASPASE-8-Z-DEVD-CHO
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic (Taxon ID: 32630)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.28
R-Value Work:
0.24
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Caspase-8 subunit p18
Gene (Uniprot):CASP8
Chain IDs:A, D (auth: C), G (auth: E), J (auth: G), M (auth: I), P (auth: K)
Chain Length:153
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Caspase-8 subunit p10
Gene (Uniprot):CASP8
Chain IDs:B, E (auth: D), H (auth: F), K (auth: H), N (auth: J), Q (auth: L)
Chain Length:89
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:(PHQ)DEVD
Chain IDs:C (auth: Q), F (auth: R), I (auth: S), L (auth: T), O (auth: U), R (auth: V)
Chain Length:5
Number of Molecules:6
Biological Source:synthetic
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASA C ASP ASPARTIC ALDEHYDE
Peptide-like Molecules
PRD_000331
Primary Citation
Caspase-8 specificity probed at subsite S(4): crystal structure of the caspase-8-Z-DEVD-cho complex.
J.Mol.Biol. 302 9 16 (2000)
PMID: 10964557 DOI: 10.1006/jmbi.2000.4041

Abstact

Caspase-8 is an initiator enzyme in the Fas-mediated pathway of which the downstream executioner caspase-3 is a physiological target. Caspases are cysteine proteases that are specific for substrates with an aspartic acid residue at the P(1) position and have an optimal recognition motif that incorporates four amino acid residues N-terminal to the cleavage site. Caspase-8 has been classified as a group III caspase member because it shows a preference for a small hydrophobic residue at the P(4) substrate position. We report the X-ray crystallographic structure of caspase-8 in complex with benzyloxycarbonyl-Asp-Glu-Val-Asp-aldehyde (Z-DEVD), a specific group II caspase inhibitor. The structure shows that the inhibitor interacts favourably with the enzyme in subsite S(4). Kinetic data reveal that Z-DEVD (K(i) 2 nM) is an almost equally potent inhibitor of caspase-8 as the specific group III inhibitor Boc-IETD-aldehyde (K(i) 1 nM). In view of this finding, the original classification of caspases into three specificity groups needs to be modified, at least for caspase-8, which tolerates small hydrophobic residues as well as the acidic residue Asp in subsite S(4). We propose that the subsite S(3) must be considered as an important specificity-determining factor.

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Primary Citation of related structures