1F4Y image
Entry Detail
PDB ID:
1F4Y
Keywords:
Title:
CRYSTAL STRUCTURE OF AN ANTI-CARBOHYDRATE ANTIBODY DIRECTED AGAINST VIBRIO CHOLERAE O1 IN COMPLEX WITH ANTIGEN
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2000-06-10
Release Date:
2000-08-02
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.35
R-Value Work:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN
Chain IDs:B (auth: H)
Chain Length:216
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN
Chain IDs:A (auth: L)
Chain Length:210
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Crystal structure of an anti-carbohydrate antibody directed against Vibrio cholerae O1 in complex with antigen: molecular basis for serotype specificity.
Proc.Natl.Acad.Sci.USA 97 8433 8438 (2000)
PMID: 10880560 DOI: 10.1073/pnas.060022997

Abstact

The crystal structure of the murine Fab S-20-4 from a protective anti-cholera Ab specific for the lipopolysaccharide Ag of the Ogawa serotype has been determined in its unliganded form and in complex with synthetic fragments of the Ogawa O-specific polysaccharide (O-SP). The upstream terminal O-SP monosaccharide is shown to be the primary antigenic determinant. Additional perosamine residues protrude outwards from the Ab surface and contribute only marginally to the binding affinity and specificity. A complementary water-excluding hydrophobic interface and five Ab-Ag hydrogen bonds are crucial for carbohydrate recognition. The structure reported here explains the serotype specificity of anti-Ogawa Abs and provides a rational basis toward the development of a synthetic carbohydrate-based anti-cholera vaccine.

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Primary Citation of related structures