1F3J image
Entry Detail
PDB ID:
1F3J
Keywords:
Title:
HISTOCOMPATIBILITY ANTIGEN I-AG7
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2000-06-04
Release Date:
2000-09-20
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN
Chain IDs:A, D
Chain Length:182
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:MHC CLASS II NOD
Chain IDs:B, E
Chain Length:187
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:LYSOZYME C
Chain IDs:C (auth: P), F (auth: Q)
Chain Length:14
Number of Molecules:2
Biological Source:Gallus gallus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN D ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural basis of peptide binding and presentation by the type I diabetes-associated MHC class II molecule of NOD mice.
Immunity 12 699 710 (2000)
PMID: 10894169 DOI: 10.1016/S1074-7613(00)80220-4

Abstact

We have determined the crystal structure of I-Ag7, an integral component in murine type I diabetes development. Several features distinguish I-Ag7 from other non-autoimmune-associated MHC class II molecules, including novel peptide and heterodimer pairing interactions. The binding groove of I-Ag7 is unusual at both terminal ends, with a potentially solvent-exposed channel at the base of the P1 pocket and a widened entrance to the P9 pocket. Peptide binding studies with variants of the hen egg lysozyme I-Ag7 epitope HEL(11-25) support a comprehensive structure-based I-Ag7 binding motif. Residues critical for T cell recognition were investigated with a panel of HEL(11-25)-restricted clones, which uncovered P1 anchor-dependent structural variations. These results establish a framework for future experiments directed at understanding the role of I-Ag7 in autoimmunity.

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Disease

Primary Citation of related structures