1F2L image
Deposition Date 2000-05-26
Release Date 2000-09-06
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1F2L
Keywords:
Title:
CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.32
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FRACTALKINE
Gene (Uniprot):CX3CL1
Chain IDs:A, B, C, D
Chain Length:76
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
The crystal structure of the chemokine domain of fractalkine shows a novel quaternary arrangement.
J.Biol.Chem. 275 23187 23193 (2000)
PMID: 10770945 DOI: 10.1074/jbc.M002584200

Abstact

Fractalkine, or neurotactin, is a chemokine that is present in endothelial cells from several tissues, including brain, liver, and kidney. It is the only member of the CX(3)C class of chemokines. Fractalkine contains a chemokine domain (CDF) attached to a membrane-spanning domain via a mucin-like stalk. However, fractalkine can also be proteolytically cleaved from its membrane-spanning domain to release a freely diffusible form. Fractalkine attracts and immobilizes leukocytes by binding to its receptor, CX(3)CR1. The x-ray crystal structure of CDF has been solved and refined to 2.0 A resolution. The CDF monomers form a dimer through an intermolecular beta-sheet. This interaction is somewhat similar to that seen in other dimeric CC chemokine crystal structures. However, the displacement of the first disulfide in CDF causes the dimer to assume a more compact quaternary structure relative to CC chemokines, which is unique to CX(3)C chemokines. Although fractalkine can bind to heparin in vitro, as shown by comparison of electrostatic surface plots with other chemokines and by heparin chromatography, the role of this property in vivo is not well understood.

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