1EYX image
Deposition Date 2000-05-09
Release Date 2000-11-22
Last Version Date 2025-03-12
Entry Detail
PDB ID:
1EYX
Keywords:
Title:
CRYSTAL STRUCTURE OF R-PHYCOERYTHRIN AT 2.2 ANGSTROMS
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.27
R-Value Observed:
0.19
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:R-PHYCOERYTHRIN
Gene (Uniprot):rpeA
Chain IDs:A, C (auth: K)
Chain Length:164
Number of Molecules:2
Biological Source:Gracilaria chilensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:R-PHYCOERYTHRIN
Gene (Uniprot):rpeB
Chain IDs:B, D (auth: L)
Chain Length:177
Number of Molecules:2
Biological Source:Gracilaria chilensis
Polymer Type:polypeptide(L)
Molecule:R-PHYCOERYTHRIN
Chain IDs:E (auth: G), F (auth: H)
Chain Length:6
Number of Molecules:2
Biological Source:Gracilaria chilensis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN B ASN N-METHYL ASPARAGINE
Primary Citation
Crystallization and 2.2 A resolution structure of R-phycoerythrin from Gracilaria chilensis: a case of perfect hemihedral twinning.
Acta Crystallogr.,Sect.D 57 52 60 (2001)
PMID: 11134927 DOI: 10.1107/S0907444900015274

Abstact

R-phycoerythrin, a light-harvesting component from the red algae Gracilaria chilensis, was crystallized by vapour diffusion using ammonium sulfate as precipitant agent. Red crystals grew after one week at 293 K and diffracted to 2.70 A resolution. Three serial macroseeding assays were necessary to grow a second larger crystal to dimensions of 0.68 x 0.16 x 0.16 mm. This crystal diffracted to 2.24 A resolution using synchrotron radiation at beamline BM14 of the European Synchrotron Radiation Facility (ESRF) at Grenoble, France and was used for structure determination. Data were collected at 100 K to a completeness of 98.6%. The crystal was trigonal, space group R3, with unit-cell parameters a = b = 187.3, c = 59.1 A, alpha = beta = 90, gamma = 120 degrees. Data treatment using the CCP4 suite of programs indicated that the crystal was twinned ((I(2))/(I)(2) = 1.41). Molecular replacement was performed with AMoRe using the R-phycoerythrin from Polysiphonia urceolata [Chang et al. (1996), J. Mol. Biol. 249, 424-440] as a search model. In order to overcome the twinning problem, SHELX97 was used for the crystallographic refinement. The twin fraction was 0.48, indicating a nearly perfect hemihedrally twinned crystal. The final R(work) and R(free) factors are 0.16 and 0.25, respectively. All the residues and chromophores of the alpha- and beta-chains are well defined in the electron-density maps. Some residues belonging to the gamma-linker are also recognizable.

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