ISDA

Deposition Date 1996-08-28

Release Date 1997-03-12

Last Version Date 2024-05-22

Entry Detail

PDB ID:

1ETF

Keywords:

Viral protein/RNA

Title:

REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Submitted:

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:REV PEPTIDE
Gene (Uniprot):rev
Chain IDs:B
Chain Length:23
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1

UniProt ID:P05866 Pfam ID:PF00424

Ligand Molecules

Primary Citation

Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.

Battiste, J.L, Mao, H, Rao, N.S, Tan, R, Muhandiram, D.R, Kay, L.E, Frankel, A.D, Williamson, J.R, Battiste, J.L, Tan, R, Frankel, A.D, Williamson, J.R, Battiste, J.L, Tan, R, Frankel, A.D, Williamson, J.R, Tan, R, Chen, L, Buettner, J.A, Hudson, D, Frankel, A.D.Show

Science 273 1547 1551 (1996)

PMID: 8703216

Abstact

The solution structure of a human immunodeficiency virus type-1 (HIV-1) Rev peptide bound to stem-loop IIB of the Rev response element (RRE) RNA was solved by nuclear magnetic resonance spectroscopy. The Rev peptide has an alpha-helical conformation and binds in the major groove of the RNA near a purine-rich internal loop. Several arginine side chains make base-specific contacts, and an asparagine residue contacts a G.A base pair. The phosphate backbone adjacent to a G.G base pair adopts an unusual structure that allows the peptide to access a widened major groove. The structure formed by the two purine-purine base pairs of the RRE creates a distinctive binding pocket that the peptide can use for specific recognition.

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Protein

Chemical

Disease

Primary Citation of related structures