1EQZ image
Deposition Date 2000-04-06
Release Date 2000-04-17
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1EQZ
Title:
X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HISTONE H2A)
Chain IDs:C (auth: A), G (auth: E)
Chain Length:129
Number of Molecules:2
Biological Source:Gallus gallus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HISTONE H2B)
Chain IDs:D (auth: B), H (auth: F)
Chain Length:126
Number of Molecules:2
Biological Source:Gallus gallus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HISTONE H3)
Gene (Uniprot):H3-I, H3-II, H3-III, H3-IV, H3-V, H3-VI, H3-VII, H3-VIII
Chain IDs:E (auth: C), I (auth: G)
Chain Length:136
Number of Molecules:2
Biological Source:Gallus gallus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HISTONE H4)
Gene (Uniprot):H4-I, H4-II, H4-III, H4-IV, H4-V, H4-VI, H4-VII
Chain IDs:F (auth: D), J (auth: H)
Chain Length:103
Number of Molecules:2
Biological Source:Gallus gallus
Polymer Type:polydeoxyribonucleotide
Molecule:146 NUCLEOTIDES LONG DNA
Chain IDs:A (auth: I), B (auth: J)
Chain Length:146
Number of Molecules:2
Biological Source:
Primary Citation
Asymmetries in the nucleosome core particle at 2.5 A resolution.
Acta Crystallogr.,Sect.D 56 1513 1534 (2000)
PMID: 11092917 DOI: 10.1107/S0907444900011847

Abstact

The 2.5 A X-ray crystal structure of the nucleosome core particle presented here provides significant additions to the understanding of the nucleosome, the fundamental unit of chromatin structure. Extensions are made to the structure of the N-terminal histone tails and details are provided on hydration and ion binding. The structure is composed of twofold symmetric molecules, native chicken histone octamer cores and the DNA palindrome, which were expected to form a perfectly twofold symmetric nucleosome core particle. In fact, the result is asymmetric owing to the binding of the DNA to the protein surface and to the packing of the particles in the crystal lattice. An analysis is made of the asymmetries by comparisons both within the nucleosome core particle and to the structure of the histone octamer core of the nucleosome.

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Primary Citation of related structures
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