1EHZ image
Deposition Date 2000-02-23
Release Date 2000-10-02
Last Version Date 2022-12-21
Entry Detail
PDB ID:
1EHZ
Keywords:
Title:
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.25
R-Value Work:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:TRANSFER RNA (PHE)
Chain IDs:A
Chain Length:76
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
1MA A A ?
2MG A G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
5MC A C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE
5MU A U 5-METHYLURIDINE 5'-MONOPHOSPHATE
7MG A G ?
H2U A U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
M2G A G N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
OMC A C O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
OMG A G O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
PSU A U PSEUDOURIDINE-5'-MONOPHOSPHATE
YYG A G ?
Primary Citation
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited
RNA 6 1091 1105 (2000)
PMID: 10943889 DOI: 10.1017/S1355838200000364

Abstact

The crystal structure of the monoclinic form of yeast phenylalanine tRNA has been redetermined at a resolution of 1.93 A. The structure of yeast tRNAphe described here is more accurate than its predecessors not only because it incorporates higher resolution data, but also because it has been refined using techniques that had not been developed when its predecessors were determined more than 20 years ago. The 1.93 A resolution version of this structure differs interestingly from its predecessors in its details. In loop regions particularly, the backbone torsion angles in the new structure are not the same as those reported earlier. Several new divalent cation binding sites have been identified, and the water structure that has emerged is also different.

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Primary Citation of related structures