1E83 image
Deposition Date 2000-09-15
Release Date 2000-11-06
Last Version Date 2024-11-13
Entry Detail
PDB ID:
1E83
Title:
Cytochrome c' from Alcaligenes xylosoxidans - oxidized structure
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.25
R-Value Work:
0.19
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CYTOCHROME C'
Chain IDs:A
Chain Length:127
Number of Molecules:1
Biological Source:ALCALIGENES XYLOSOXIDANS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLU PYROGLUTAMIC ACID
Ligand Molecules
Primary Citation
Unprecedented Proximal Binding of Nitric Oxide to Heme: Implications for Guanylate Cyclase
Embo J. 19 5661 ? (2000)
PMID: 11060017 DOI: 10.1093/EMBOJ/19.21.5661

Abstact

Microbial cytochromes c' contain a 5-coordinate His-ligated heme that forms stable adducts with nitric oxide (NO) and carbon monoxide (CO), but not with dioxygen. We report the 1.95 and 1.35 A resolution crystal structures of the CO- and NO-bound forms of the reduced protein from Alcaligenes xylosoxidans. NO disrupts the His-Fe bond and binds in a novel mode to the proximal face of the heme, giving a 5-coordinate species. In contrast, CO binds 6-coordinate on the distal side. A second CO molecule, not bound to the heme, is located in the proximal pocket. Since the unusual spectroscopic properties of cytochromes c' are shared by soluble guanylate cyclase (sGC), our findings have potential implications for the activation of sGC induced by the binding of NO or CO to the heme domain.

Legend

Protein

Chemical

Disease

Primary Citation of related structures