1DZI image
Deposition Date 2000-03-01
Release Date 2001-03-01
Last Version Date 2025-04-09
Entry Detail
PDB ID:
1DZI
Keywords:
Title:
integrin alpha2 I domain / collagen complex
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:INTEGRIN
Gene (Uniprot):ITGA2
Chain IDs:A
Chain Length:185
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:COLLAGEN
Chain IDs:B, C, D
Chain Length:22
Number of Molecules:3
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HYP B PRO 4-HYDROXYPROLINE
Ligand Molecules
Primary Citation
Structural Basis of Collagen Recognition by Integrin Alpha2Beta1
Cell(Cambridge,Mass.) 101 47 ? (2000)
PMID: 10778855 DOI: 10.1016/S0092-8674(00)80622-4

Abstact

We have determined the crystal structure of a complex between the I domain of integrin alpha2beta1 and a triple helical collagen peptide containing a critical GFOGER motif. Three loops on the upper surface of the I domain that coordinate a metal ion also engage the collagen, with a collagen glutamate completing the coordination sphere of the metal. Comparison with the unliganded I domain reveals a change in metal coordination linked to a reorganization of the upper surface that together create a complementary surface for binding collagen. Conformational changes propagate from the upper surface to the opposite pole of the domain, suggesting both a basis for affinity regulation and a pathway for signal transduction. The structural features observed here may represent a general mechanism for integrin-ligand recognition.

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Primary Citation of related structures
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