1DYK image
Deposition Date 2000-02-01
Release Date 2001-02-04
Last Version Date 2024-10-09
Entry Detail
PDB ID:
1DYK
Title:
Laminin alpha 2 chain LG4-5 domain pair
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.26
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LAMININ ALPHA 2 CHAIN
Gene (Uniprot):Lama2
Mutations:YES
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:MUS MUSCULUS
Ligand Molecules
Primary Citation
Structure of the C-Terminal Laminin G-Like Domain Pair of the Laminin Alpha 2 Chain Harbouring Binding Sites for Alpha-Dystroglycan and Heparin
Embo J. 19 1432 ? (2000)
PMID: 10747011 DOI: 10.1093/EMBOJ/19.7.1432

Abstact

The laminins are large heterotrimeric glycoproteins with fundamental roles in basement membrane architecture and function. The C-terminus of the laminin alpha chain contains a tandem of five laminin G-like (LG) domains. We report the 2.0 A crystal structure of the laminin alpha2 LG4-LG5 domain pair, which harbours binding sites for heparin and the cell surface receptor alpha-dystroglycan, and is 41% identical to the laminin alpha1 E3 fragment. LG4 and LG5 are arranged in a V-shaped fashion related by a 110 degrees rotation about an axis passing near the domain termini. An extended N-terminal segment is disulfide bonded to LG5 and stabilizes the domain pair. Two calcium ions, one each in LG4 and LG5, are located 65 A apart at the tips of the domains opposite the polypeptide termini. An extensive basic surface region between the calcium sites is proposed to bind alpha-dystroglycan and heparin. The LG4-LG5 structure was used to construct a model of the laminin LG1-LG5 tandem and interpret missense mutations underlying protein S deficiency.

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Primary Citation of related structures