1DXR image
Entry Detail
PDB ID:
1DXR
Keywords:
Title:
Photosynthetic reaction center from Rhodopseudomonas viridis - His L168 Phe mutant (terbutryn complex)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2000-01-15
Release Date:
2001-01-12
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT
Chain IDs:A (auth: C)
Chain Length:336
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Polymer Type:polypeptide(L)
Description:PHOTOSYNTHETIC REACTION CENTER H SUBUNIT
Chain IDs:B (auth: H)
Chain Length:258
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Polymer Type:polypeptide(L)
Description:PHOTOSYNTHETIC REACTION CENTER L SUBUNIT
Mutations:H168F
Chain IDs:C (auth: L)
Chain Length:273
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Polymer Type:polypeptide(L)
Description:PHOTOSYNTHETIC REACTION CENTER M SUBUNIT
Chain IDs:D (auth: M)
Chain Length:323
Number of Molecules:1
Biological Source:RHODOPSEUDOMONAS VIRIDIS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
FME B MET N-FORMYLMETHIONINE
Primary Citation
Structural basis of the drastically increased initial electron transfer rate in the reaction center from a Rhodopseudomonas viridis mutant described at 2.00-A resolution.
J. Biol. Chem. 275 39364 39368 (2000)
PMID: 11005826 DOI: 10.1074/jbc.M008225200

Abstact

It has previously been shown that replacement of the residue His L168 with Phe (HL168F) in the Rhodopseudomonas viridis reaction center (RC) leads to an unprecedented drastic acceleration of the initial electron transfer rate. Here we describe the determination of the x-ray crystal structure at 2.00-A resolution of the HL168F RC. The electron density maps confirm that a hydrogen bond from the protein to the special pair is removed by this mutation. Compared with the wild-type RC, the acceptor of this hydrogen bond, the ring I acetyl group of the "special pair" bacteriochlorophyll, D(L), is rotated, and its acetyl oxygen is found 1.1 A closer to the bacteriochlorophyll-Mg(2+) of the other special pair bacteriochlorophyll, D(M). The rotation of this acetyl group and the increased interaction between the D(L) ring I acetyl oxygen and the D(M)-Mg(2+) provide the structural basis for the previously observed 80-mV decrease in the D(+)/D redox potential and the drastically increased rate of initial electron transfer to the accessory bacteriochlorophyll, B(A). The high quality of the electron density maps also allowed a reliable discussion of the mode of binding of the triazine herbicide terbutryn at the binding site of the secondary quinone, Q(B).

Legend

Protein

Chemical

Disease

Primary Citation of related structures