1DWP image
Entry Detail
PDB ID:
1DWP
Title:
Crystal Structure of Hydroxynitrile Lyase from Manihot esculenta at 2.2 Angstrom Resolution
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
1999-12-10
Release Date:
2000-12-07
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HYDROXYNITRILE LYASE
Chain IDs:A, B
Chain Length:262
Number of Molecules:2
Biological Source:MANIHOT ESCULENTA
Ligand Molecules
Primary Citation
Structure of Hydroxynitrile Lyase from Manihot Esculenta in Complex with Substrates Acetone and Chloroacetone: Implications for the Mechanism of Cyanogenesis
Acta Crystallogr.,Sect.D 57 194 ? (2001)
PMID: 11173464 DOI: 10.1107/S0907444900015766

Abstact

The crystal structures of hydroxynitrile lyase from Manihot esculenta (MeHNL) complexed with the native substrate acetone and substrate analogue chloroacetone have been determined and refined at 2.2 A resolution. The substrates are positioned in the active site by hydrogen-bond interactions of the carbonyl O atom with Thr11 OG, Ser80 OG and, to a lesser extent, Cys81 SG. These studies support a mechanism for cyanogenesis as well as for the stereospecific MeHNL-catalyzed formation of (S)-cyanohydrins, which closely resembles the base-catalyzed chemical reaction of HCN with carbonyl compounds.

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Primary Citation of related structures