1DVM image
Deposition Date 2000-01-21
Release Date 2000-09-06
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1DVM
Keywords:
Title:
ACTIVE FORM OF HUMAN PAI-1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.29
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PLASMINOGEN ACTIVATOR INHIBITOR-1
Gene (Uniprot):SERPINE1
Mutations:N150H, K154T, Q319L, M354I
Chain IDs:A, B, C, D
Chain Length:379
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structures of active and latent PAI-1: a possible stabilizing role for chloride ions.
Biochemistry 39 8460 8469 (2000)
PMID: 10913251 DOI: 10.1021/bi000290w

Abstact

Serpins exhibit a range of physiological roles and can contribute to certain disease states dependent on their various conformations. Understanding the mechanisms of the large-scale conformational reorganizations of serpins may lead to a better understanding of their roles in various cardiovascular diseases. We have studied the serpin, plasminogen activator inhibitor 1 (PAI-1), in both the active and the latent state and found that anionic halide ions may play a role in the active-to-latent structural transition. Crystallographic analysis of a stable mutant form of active PAI-1 identified an anion-binding site between the central beta-sheet and a small surface domain. A chloride ion was modeled in this site, and its identity was confirmed by soaking crystals in a bromide-containing solution and calculating a crystallographic difference map. The anion thus located forms a 4-fold ligated linchpin that tethers the surface domain to the central beta-sheet into which the reactive center loop must insert during the active-to-latent transition. Timecourse experiments measuring active PAI-1 stability in the presence of various halide ions showed a clear trend for stabilization of the active form with F(-) > Cl(-) > Br(-) >> I(-). We propose that the "stickiness" of this pin (i.e., the electronegativity of the anion) contributes to the energetics of the active-to-latent transition in the PAI-1 serpin.

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Primary Citation of related structures