1DVG image
Deposition Date 2000-01-20
Release Date 2000-04-12
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1DVG
Keywords:
Title:
CRYSTAL STRUCTURE OF RAT HEME OXYGENASE-1 IN COMPLEX WITH HEME; SELELENO-METHIONINE DERIVATIVE, MUTATED AT M51T,M93L,M155L,M191L.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 43
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HEME OXYGENASE-1
Gene (Uniprot):Hmox1
Mutations:M1(MSE), M9(MSE), M34(MSE), M51T, M93L, M155L, M186(MSE), M191L
Chain IDs:A, B
Chain Length:267
Number of Molecules:2
Biological Source:Rattus norvegicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Crystal structure of rat heme oxygenase-1 in complex with heme.
FEBS Lett. 471 61 66 (2000)
PMID: 10760513 DOI: 10.1016/S0014-5793(00)01353-3

Abstact

Heme oxygenase catalyzes the oxidative cleavage of protoheme to biliverdin, the first step of heme metabolism utilizing O(2) and NADPH. We determined the crystal structures of rat heme oxygenase-1 (HO-1)-heme and selenomethionyl HO-1-heme complexes. Heme is sandwiched between two helices with the delta-meso edge of the heme being exposed to the surface. Gly143N forms a hydrogen bond to the distal ligand of heme, OH(-). The distance between Gly143N and the ligand is shorter than that in the human HO-1-heme complex. This difference may be related to a pH-dependent change of the distal ligand of heme. Flexibility of the distal helix may control the stability of the coordination of the distal ligand to heme iron. The possible role of Gly143 in the heme oxygenase reaction is discussed.

Legend

Protein

Chemical

Disease

Primary Citation of related structures