1DQ6 image
Deposition Date 1999-12-30
Release Date 2000-01-19
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1DQ6
Title:
Manganese;Manganese concanavalin A at pH 7.0
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Concanavalin-A
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Canavalia ensiformis
Ligand Molecules
Primary Citation
The structural features of concanavalin A governing non-proline peptide isomerization
J.Biol.Chem. 275 19778 19787 (2000)
PMID: 10748006 DOI: 10.1074/jbc.M001251200

Abstact

The reversible binding of manganese and calcium to concanavalin A determines the carbohydrate binding of the lectin by inducing large conformational changes. These changes are governed by the isomerization of a non-proline peptide bond, Ala-207-Asp-208, positioned in a beta-strand in between the calcium binding site S2 and the carbohydrate specificity-determining loop. The replacement of calcium by manganese allowed us to investigate the structures of the carbohydrate binding, locked state and the inactive, unlocked state of concanavalin A, both with and without metal ions bound. Crystals of unlocked metal-free concanavalin A convert to the locked form with the binding of two Mn(2+) ions. Removal of these ions from the crystals traps metal-free concanavalin A in its locked state, a minority species in solution. The ligation of a metal ion in S2 to unlocked concanavalin A causes bending of the beta-strand foregoing the S2 ligand residues Asp-10 and Tyr-12. This bending disrupts conventional beta-sheet hydrogen bonding and forces the Thr-11 side chain against the Ala-207-Asp-208 peptide bond. The steric strain exerted by Thr-11 is presumed to drive the trans-to-cis isomerization. Upon isomerization, Asp-208 flips into its carbohydrate binding position, and the conformation of the carbohydrate specificity determining loop changes dramatically.

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Primary Citation of related structures