1DM1 image
Deposition Date 1999-12-13
Release Date 2000-06-21
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1DM1
Title:
2.0 A CRYSTAL STRUCTURE OF THE DOUBLE MUTANT H(E7)V, T(E10)R OF MYOGLOBIN FROM APLYSIA LIMACINA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.21
R-Value Work:
0.18
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MYOGLOBIN
Mutations:V63H, R66T
Chain IDs:A
Chain Length:146
Number of Molecules:1
Biological Source:Aplysia limacina
Ligand Molecules
Primary Citation
Engineering His(E7) affects the control of heme reactivity in Aplysia limacina myoglobin.
Biochem.Biophys.Res.Commun. 269 58 63 (2000)
PMID: 10694477 DOI: 10.1006/bbrc.2000.2259

Abstact

Aplysia limacina myoglobin lacks the distal histidine (His (E7)) and displays a ligand stabilization mechanism based on Arg(E10). The double mutant Val(E7)His-Arg(E10)Thr has been prepared to engineer the role of His(E7), typical of mammalian myoglobins, in a different globin framework. The 2.0 A crystal structure of Val(E7)His-Arg(E10)Thr met-Mb mutant reveals that the His(E7) side chain points out of the distal pocket, providing an explanation for the observed failure to stabilize the Fe(II) bound oxygen in the ferrous myoglobin. Moreover, spectroscopic analysis together with kinetic data on azide binding to met-myoglobin are reported and discussed in terms of the presence of a water molecule at coordination distance from the heme iron.

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Primary Citation of related structures