1DM0 image
Deposition Date 1999-12-13
Release Date 1999-12-30
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1DM0
Keywords:
Title:
SHIGA TOXIN
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SHIGA TOXIN A SUBUNIT
Chain IDs:A, B (auth: L)
Chain Length:287
Number of Molecules:2
Biological Source:Shigella dysenteriae
Polymer Type:polypeptide(L)
Molecule:SHIGA TOXIN B SUBUNIT
Gene (Uniprot):stxB
Chain IDs:C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F), H (auth: G), I (auth: H), J (auth: I), K (auth: J), L (auth: K)
Chain Length:69
Number of Molecules:10
Biological Source:Shigella dysenteriae
Primary Citation
Crystal structure of the holotoxin from Shigella dysenteriae at 2.5 A resolution.
Nat.Struct.Biol. 1 59 64 (1994)
PMID: 7656009 DOI: 10.1038/nsb0194-59

Abstact

Shigella dysenteriae is the pathogen responsible for the severe form of dysentery in humans. It produces Shiga toxin, the prototype of a family of closely related bacterial protein toxins. We have determined the structure of the holotoxin, an AB5 hexamer, by X-ray crystallography. The five B subunits form a pentameric ring, encircling a helix at the carboxy terminus of the A subunit. The A subunit interacts with the B pentamer via this C-terminal helix and a four-stranded mixed beta-sheet. The fold of the rest of the A subunit is similar to that of the A chain of the plant toxin ricin; both are N-glycosidases. However, the active site in the bacterial holotoxin is blocked by a segment of polypeptide chain. These residues of the A subunit would be released as part of the activation mechanism of the toxin.

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Primary Citation of related structures