1DKA image
Deposition Date 1993-06-18
Release Date 1994-10-15
Last Version Date 2025-03-26
Entry Detail
PDB ID:
1DKA
Title:
DIALKYLGLYCINE DECARBOXYLASE STRUCTURE: BIFUNCTIONAL ACTIVE SITE AND ALKALI METAL BINDING SITES
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Observed:
0.17
Space Group:
P 64 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)
Gene (Uniprot):dgdA
Chain IDs:A
Chain Length:433
Number of Molecules:1
Biological Source:Burkholderia cepacia
Primary Citation
Dialkylglycine decarboxylase structure: bifunctional active site and alkali metal sites.
Science 261 756 759 (1993)
PMID: 8342040

Abstact

The structure of the bifunctional, pyridoxal phosphate-dependent enzyme dialkylglycine decarboxylase was determined to 2.1-angstrom resolution. Model building suggests that a single cleavage site catalyzes both decarboxylation and transamination by maximizing stereoelectronic advantages and providing electrostatic and general base catalysis. The enzyme contains two binding sites for alkali metal ions. One is located near the active site and accounts for the dependence of activity on potassium ions. The other is located at the carboxyl terminus of an alpha helix. These sites help show how proteins can specifically bind alkali metals and how these ions can exert functional effects.

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Primary Citation of related structures