1DIY image
Deposition Date 1999-11-30
Release Date 2000-09-22
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1DIY
Keywords:
Title:
CRYSTAL STRUCTURE OF ARACHIDONIC ACID BOUND IN THE CYCLOOXYGENASE ACTIVE SITE OF PGHS-1
Biological Source:
Source Organism:
Ovis aries (Taxon ID: 9940)
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROSTAGLANDIN H2 SYNTHASE-1
Chain IDs:A
Chain Length:553
Number of Molecules:1
Biological Source:Ovis aries
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
The productive conformation of arachidonic acid bound to prostaglandin synthase.
Science 289 1933 1937 (2000)
PMID: 10988074 DOI: 10.1126/science.289.5486.1933

Abstact

Prostaglandin H synthase-1 and -2 (PGHS-1 and -2) catalyze the committed step in prostaglandin synthesis and are targets for nonsteroidal anti-inflammatory drugs (NSAIDs) like aspirin. We have determined the structure of PGHS-1 at 3 angstrom resolution with arachidonic acid (AA) bound in a chemically productive conformation. The fatty acid adopts an extended L-shaped conformation that positions the 13proS hydrogen of AA for abstraction by tyrosine-385, the likely radical donor. A space also exists for oxygen addition on the antarafacial surface of the carbon in the 11-position (C-11). While this conformation allows endoperoxide formation between C-11 and C-9, it also implies that a subsequent conformational rearrangement must occur to allow formation of the C-8/C-12 bond and to position C-15 for attack by a second molecule of oxygen.

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Primary Citation of related structures