1DG6 image
Deposition Date 1999-11-23
Release Date 2000-01-26
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1DG6
Keywords:
Title:
CRYSTAL STRUCTURE OF APO2L/TRAIL
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.19
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:APO2L/TNF-RELATED APOPOTIS INDUCING LIGAND (TRAIL)
Gene (Uniprot):TNFSF10
Mutations:D218A
Chain IDs:A
Chain Length:191
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
A unique zinc-binding site revealed by a high-resolution X-ray structure of homotrimeric Apo2L/TRAIL.
Biochemistry 39 633 650 (2000)
PMID: 10651627 DOI: 10.1021/bi992242l

Abstact

Apoptosis-inducing ligand 2 (Apo2L, also called TRAIL), a member of the tumor necrosis factor (TNF) family, induces apoptosis in a variety of human tumor cell lines but not in normal cells [Wiley, S. R., Schooley, K., Smolak, P. J., Din, W. S., Huang, C.-P., Nicholl, J. K., Sutherland, G. R., Smith, T. D., Rauch, C., Smith, C. A., and Goodwin, R. G. (1995) Immunity 3, 673-682; Pitti, R. M., Marsters, S. A., Ruppert, S., Donahue, C. J., Moore, A., and Ashkenazi, A. (1996) J. Biol. Chem. 271, 12687-12690]. Here we describe the structure of Apo2L at 1.3 A resolution and use alanine-scanning mutagenesis to map the receptor contact regions. The structure reveals a homotrimeric protein that resembles TNF with receptor-binding epitopes at the interface between monomers. A zinc ion is buried at the trimer interface, coordinated by the single cysteine residue of each monomer. The zinc ion is required for maintaining the native structure and stability and, hence, the biological activity of Apo2L. This is the first example of metal-dependent oligomerization and function of a cytokine.

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