1DEQ image
Deposition Date 1999-11-15
Release Date 2000-02-02
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1DEQ
Keywords:
Title:
THE CRYSTAL STRUCTURE OF MODIFIED BOVINE FIBRINOGEN (AT ~4 ANGSTROM RESOLUTION)
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.37
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FIBRINOGEN (ALPHA CHAIN)
Gene (Uniprot):FGA
Chain IDs:A, D, H (auth: N), K (auth: Q)
Chain Length:390
Number of Molecules:4
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FIBRINOGEN (BETA CHAIN)
Gene (Uniprot):FGB
Chain IDs:B, E, I (auth: O), L (auth: R)
Chain Length:408
Number of Molecules:4
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FIBRINOGEN (GAMMA CHAIN)
Gene (Uniprot):FGG
Chain IDs:C, F, J (auth: P), M (auth: S)
Chain Length:411
Number of Molecules:4
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:FIBRINOGEN
Chain IDs:G (auth: M), N (auth: Z)
Chain Length:90
Number of Molecules:2
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
The crystal structure of modified bovine fibrinogen.
Proc.Natl.Acad.Sci.USA 97 85 90 (2000)
PMID: 10618375 DOI: 10.1073/pnas.97.1.85

Abstact

Here we report the crystal structure at approximately 4-A resolution of a selectively proteolyzed bovine fibrinogen. This key component in hemostasis is an elongated 340-kDa glycoprotein in the plasma that upon activation by thrombin self-assembles to form the fibrin clot. The crystals are unusual because they are made up of end-to-end bonded molecules that form flexible filaments. We have visualized the entire coiled-coil region of the molecule, which has a planar sigmoidal shape. The primary polymerization receptor pockets at the ends of the molecule face the same way throughout the end-to-end bonded filaments, and based on this conformation, we have developed an improved model of the two-stranded protofibril that is the basic building block in fibrin. Near the middle of the coiled-coil region, the plasmin-sensitive segment is a hinge about which the molecule adopts different conformations. This segment also includes the boundary between the three- and four-stranded portions of the coiled coil, indicating the location on the backbone that anchors the extended flexible Aalpha arm. We suggest that a flexible branch point in the molecule may help accommodate variability in the structure of the fibrin clot.

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Primary Citation of related structures
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