1DEC image
Deposition Date 1994-05-17
Release Date 1994-08-31
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1DEC
Title:
STRUCTURE OF THE RGD PROTEIN DECORSIN: CONSERVED MOTIF AND DISTINCT FUNCTION IN LEECH PROTEINS THAT AFFECT BLOOD CLOTTING
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Submitted:
25
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DECORSIN
Chain IDs:A
Chain Length:39
Number of Molecules:1
Biological Source:Macrobdella decora
Ligand Molecules
Primary Citation
Structure of the RGD protein decorsin: conserved motif and distinct function in leech proteins that affect blood clotting.
Science 264 1944 1947 (1994)
PMID: 8009227

Abstact

The structure of the leech protein decorsin, a potent 39-residue antagonist of glycoprotein IIb-IIIa and inhibitor of platelet aggregation, was determined by nuclear magnetic resonance. In contrast to other disintegrins, the Arg-Gly-Asp (RGD)-containing region of decorsin is well defined. The three-dimensional structure of decorsin is similar to that of hirudin, an anticoagulant leech protein that potently inhibits thrombin. Amino acid sequence comparisons suggest that ornatin, another glycoprotein IIb-IIIa antagonist, and antistasin, a potent Factor Xa inhibitor and anticoagulant found in leeches, share the same structural motif. Although decorsin, hirudin, and antistasin all affect the blood clotting process and appear similar in structure, their mechanisms of action and epitopes important for binding to their respective targets are distinct.

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Primary Citation of related structures