1DBF image
Deposition Date 1999-11-02
Release Date 2000-06-07
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1DBF
Keywords:
Title:
CHORISMATE MUTASE FROM BACILLUS SUBTILIS AT 1.30 ANGSTROM
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.23
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (CHORISMATE MUTASE)
Gene (Uniprot):aroH
Chain IDs:A, B, C
Chain Length:127
Number of Molecules:3
Biological Source:Bacillus subtilis
Primary Citation
The 1.30 A resolution structure of the Bacillus subtilis chorismate mutase catalytic homotrimer.
Acta Crystallogr.,Sect.D 56 673 683 (2000)
PMID: 10818343 DOI: 10.1107/S0907444900004625

Abstact

The crystal structure of the Bacillus subtilis chorismate mutase, an enzyme of the aromatic amino acids biosynthetic pathway, was determined to 1.30 A resolution. The structure of the homotrimer was determined by molecular replacement using orthorhombic crystals of space group P2(1)2(1)2(1) with unit-cell parameters a = 52.2, b = 83. 8, c = 86.0 A. The ABC trimer of the monoclinic crystal structure [Chook et al. (1994), J. Mol. Biol. 240, 476-500] was used as the starting model. The final coordinates are composed of three complete polypeptide chains of 127 amino-acid residues. In addition, there are nine sulfate ions, five glycerol molecules and 424 water molecules clearly visible in the structure. This structure was refined with aniosotropic temperature factors, has excellent geometry and a crystallographic R factor of 0.169 with an R(free) of 0.236. The three active sites of the macromolecule are at the subunit interfaces, with residues from two subunits contributing to each site. This orthorhombic crystal form was grown using ammonium sulfate as the precipitant; glycerol was used as a cryoprotectant during data collection. A glycerol molecule and sulfate ion in each of the active sites was found mimicking a transition-state analog. In this structure, the C-terminal tails of the subunits of the trimer are hydrogen bonded to residues of the active site of neighboring trimers in the crystal and thus cross-link the molecules in the crystal lattice.

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