1DB5 image
Deposition Date 1999-11-02
Release Date 1999-11-12
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1DB5
Title:
HUMAN S-PLA2 IN COMPLEX WITH INDOLE 6
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (PHOSPHOLIPASE A2)
Gene (Uniprot):PLA2G2A
Chain IDs:A
Chain Length:124
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure-based design of the first potent and selective inhibitor of human non-pancreatic secretory phospholipase A2.
Nat.Struct.Biol. 2 458 465 (1995)
PMID: 7664108 DOI: 10.1038/nsb0695-458

Abstact

A lead compound obtained from a high volume human non-pancreatic secretory phospholipase A2 (hnps-PLA2) screen has been developed into a potent inhibitor using detailed structural knowledge of inhibitor binding to the enzyme active site. Four crystal structures of hnps-PLA2 complexed with a series of increasingly potent indole inhibitors were determined and used as the structural basis for both understanding this binding and providing valuable insights for further development. The application of structure-based drug design has made possible improvements in the binding of this screening lead to the enzyme by nearly three orders of magnitude. Furthermore, the optimized structure (LY311727) displayed 1,500-fold selectivity when assayed against porcine pancreatic s-PLA2.

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Primary Citation of related structures
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