1DB1 image
Deposition Date 1999-11-02
Release Date 2000-01-31
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1DB1
Keywords:
Title:
CRYSTAL STRUCTURE OF THE NUCLEAR RECEPTOR FOR VITAMIN D COMPLEXED TO VITAMIN D
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VITAMIN D NUCLEAR RECEPTOR
Gene (Uniprot):VDR
Chain IDs:A
Chain Length:259
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The crystal structure of the nuclear receptor for vitamin D bound to its natural ligand.
Mol.Cell 5 173 179 (2000)
PMID: 10678179 DOI: 10.1016/S1097-2765(00)80413-X

Abstact

The action of 1 alpha, 25-dihydroxyvitamin D3 is mediated by its nuclear receptor (VDR), a ligand-dependent transcription regulator. We report the 1.8 A resolution crystal structure of the complex between a VDR ligand-binding domain (LBD) construct lacking the highly variable VDR-specific insertion domain and vitamin D. The construct exhibits the same binding affinity for vitamin D and transactivation ability as the wild-type protein, showing that the N-terminal part of the LBD is essential for its structural and functional integrity while the large insertion peptide is dispensable. The structure reveals the active conformation of the bound ligand and allows understanding of the different binding properties of some synthetic analogs.

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Primary Citation of related structures