1D5W image
Deposition Date 1999-10-12
Release Date 2000-10-11
Last Version Date 2021-11-03
Entry Detail
PDB ID:
1D5W
Keywords:
Title:
PHOSPHORYLATED FIXJ RECEIVER DOMAIN
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ
Gene (Uniprot):fixJ
Mutagens:T2Q, A125L
Chain IDs:A, B, C
Chain Length:126
Number of Molecules:3
Biological Source:Sinorhizobium meliloti
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PHD A ASP ASPARTYL PHOSPHATE
Ligand Molecules
Primary Citation
Conformational changes induced by phosphorylation of the FixJ receiver domain.
Structure Fold.Des. 7 1505 1515 (1999)
PMID: 10647181 DOI: 10.1016/S0969-2126(00)88341-0

Abstact

BACKGROUND: A variety of bacterial adaptative cellular responses to environmental stimuli are mediated by two-component signal transduction pathways. In these phosphorelay cascades, histidine kinases transphosphorylate a conserved aspartate in the receiver domain, a conserved module in the response regulator superfamily. The main effect of this phosphorylation is to alter the conformation of the response regulator in order to modulate its biological function. The response regulator FixJ displays a typical modular arrangement, with a phosphorylatable N-terminal receiver domain and a C-terminal DNA-binding domain. In the symbiotic bacterium Sinorhizobium meliloti, phosphorylation of this response regulator activates transcription of nitrogen-fixation genes. RESULTS: The crystal structures of the phosphorylated and of the unphosphorylated N-terminal receiver domain of FixJ (FixJN) were solved at 2.3 A and 2.4 A resolution, respectively. They reveal the environment of the phosphoaspartate in the active site and the specific conformational changes leading to activation of the response regulator. Phosphorylation of the conserved aspartate induces major structural changes in the beta 4-alpha 4 loop, and in the signaling surface alpha 4-beta 5 that mediates dimerization of the phosphorylated full-length response regulator. A site-directed mutant at this protein-protein interface decreases the affinity of the phosphorylated response regulator for the fixK promoter tenfold. CONCLUSIONS: The cascade of phosphorylation-induced conformational changes in FixJN illustrates the role of conserved residues in stabilizing the phosphoryl group in the active site, triggering the structural transition and achieving the post-phosphorylation signaling events. We propose that these phosphorylation-induced conformational changes underly the activation of response regulators in general.

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Primary Citation of related structures
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