1D3B image
Deposition Date 1998-12-22
Release Date 1999-12-22
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1D3B
Title:
CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.26
R-Value Work:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3)
Gene (Uniprot):SNRPD3
Mutations:S66C
Chain IDs:A, C, E, G, I, K
Chain Length:75
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
Gene (Uniprot):SNRPB
Chain IDs:B, D, F, H, J, L
Chain Length:91
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs.
Cell(Cambridge,Mass.) 96 375 387 (1999)
PMID: 10025403 DOI: 10.1016/S0092-8674(00)80550-4

Abstact

The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F, and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs (snRNAs). These proteins share a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. Crystal structures of two Sm protein complexes, D3B and D1D2, show that these proteins have a common fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta sheet, and the D1D2 and D3B dimers superpose closely in their core regions, including the dimer interfaces. The crystal structures suggest that the seven Sm proteins could form a closed ring and the snRNAs may be bound in the positively charged central hole.

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Primary Citation of related structures