1D1O image
Deposition Date 1999-09-20
Release Date 2000-03-08
Last Version Date 2024-05-22
Entry Detail
PDB ID:
1D1O
Title:
COOPERATIVITY IN EF-HAND CA2+-BINDING PROTEINS: EVIDENCE OF SITE-SITE COMMUNICATION FROM BINDING-INDUCED CHANGES IN STRUCTURE AND DYNAMICS OF N56A CALBINDIN D9K
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
24
Selection Criteria:
STRUCTURES WITH ACCEPTABLE MOLECULAR ENEGIES WERE ORDERED BY LEAST RESTRAINT VIOLATIONS. THE 24 BEST CONFORMERS WERE SELECTED TO FACILITATE COMPARISON TO PREVIOUS STRUCTURES OF THE PROTEIN AND BECAUSE THIS SURPASSES THE STATISTICAL REQUIREMENT TO REPRESENT ALL OF CONFORMATIONAL SPACE CONSISTENT WITH THE DATA.
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CALBINDIN D9K
Gene (Uniprot):S100G
Mutations:P43M, N56A
Chain IDs:A
Chain Length:75
Number of Molecules:1
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
Site-site communication in the EF-hand Ca2+-binding protein calbindin D9k.
Nat.Struct.Biol. 7 245 250 (2000)
PMID: 10700285 DOI: 10.1038/73369

Abstact

The cooperative binding of Ca2+ ions is an essential functional property of the EF-hand family of Ca2+-binding proteins. To understand how these proteins function, it is essential to characterize intermediate binding states in addition to the apo- and holo-proteins. The three-dimensional solution structure and fast time scale internal motional dynamics of the backbone have been determined for the half-saturated state of the N56A mutant of calbindin D9k with Ca2+ bound only in the N-terminal site. The extent of conformational reorganization and a loss of flexibility in the C-terminal EF-hand upon binding of an ion in the N-terminal EF-hand provide clear evidence of the importance of site-site interactions in this family of proteins, and demonstrates the strength of long-range effects in the cooperative EF-hand Ca2+-binding domain.

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Primary Citation of related structures