1CN3 image
Deposition Date 1999-05-24
Release Date 1999-06-09
Last Version Date 2023-12-27
Entry Detail
PDB ID:
1CN3
Keywords:
Title:
INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY
Biological Source:
Source Organism:
Polyomavirus (Taxon ID: 10624)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.26
R-Value Work:
0.23
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:COAT PROTEIN VP1
Chain IDs:A, B, C, D, E
Chain Length:283
Number of Molecules:5
Biological Source:Polyomavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:FRAGMENT OF COAT PROTEIN VP2
Chain IDs:F
Chain Length:29
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Interaction of polyomavirus internal protein VP2 with the major capsid protein VP1 and implications for participation of VP2 in viral entry.
EMBO J. 17 3233 3240 (1998)
PMID: 9628860 DOI: 10.1093/emboj/17.12.3233

Abstact

A complex of the polyomavirus internal protein VP2/VP3 with the pentameric major capsid protein VP1 has been prepared by co-expression in Escherichia coli. A C-terminal segment of VP2/VP3 is required for tight association, and a crystal structure of this segment, complexed with a VP1 pentamer, has been determined at 2.2 A resolution. The structure shows specific contacts between a single copy of the internal protein and a pentamer of VP1. These interactions were not detected in the previously described structure of the virion, but the location of VP2 in the recombinant complex is consistent with features in the virion electron-density map. The C-terminus of VP2/VP3 inserts in an unusual, hairpin-like manner into the axial cavity of the VP1 pentamer, where it is anchored strongly by hydrophobic interactions. The remainder of the internal protein appears to have significant flexibility. This structure restricts possible models for exposure of the internal proteins during viral entry.

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Primary Citation of related structures
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