1CK4 image
Deposition Date 1999-04-27
Release Date 2000-05-03
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1CK4
Title:
CRYSTAL STRUCTURE OF RAT A1B1 INTEGRIN I-DOMAIN.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.29
R-Value Work:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:INTEGRIN ALPHA-1
Gene (Uniprot):Itga1
Chain IDs:A, B
Chain Length:198
Number of Molecules:2
Biological Source:Rattus norvegicus
Primary Citation
Crystal structure of the alpha1beta1 integrin I-domain: insights into integrin I-domain function.
FEBS Lett. 452 379 385 (1999)
PMID: 10386626 DOI: 10.1016/S0014-5793(99)00666-3

Abstact

The alpha1beta1 integrin is a major cell surface receptor for collagen. Ligand binding is mediated, in part, through a 200 amino acid inserted 'I'-domain contained in the extracellular part of the integrin alpha chain. Integrin I-domains contain a divalent cation binding (MIDAS) site and require cations to interact with integrin ligands. We have determined the crystal structure of recombinant I-domain from the rat alpha1beta1 integrin at 2.2 A resolution in the absence of divalent cations. The alpha1 I-domain adopts the dinucleotide binding fold that is characteristic of all I-domain structures that have been solved to date and has a structure very similar to that of the closely related alpha2beta1 I-domain which also mediates collagen binding. A unique feature of the alpha1 I-domain crystal structure is that the MIDAS site is occupied by an arginine side chain from another I-domain molecule in the crystal, in place of a metal ion. This interaction supports a proposed model for ligand-induced displacement of metal ions. Circular dichroism spectra determined in the presence of Ca2+, Mg2+ and Mn2+ indicate that no changes in the structure of the I-domain occur upon metal ion binding in solution. Metal ion binding induces small changes in UV absorption spectra, indicating a change in the polarity of the MIDAS site environment.

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