1CG5 image
Deposition Date 1999-03-26
Release Date 1999-04-01
Last Version Date 2023-08-09
Entry Detail
PDB ID:
1CG5
Title:
DEOXY FORM HEMOGLOBIN FROM DASYATIS AKAJEI
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.19
Space Group:
P 31 1 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HEMOGLOBIN)
Gene (Uniprot):hba
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Dasyatis akajei
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HEMOGLOBIN)
Gene (Uniprot):HBB
Chain IDs:B
Chain Length:141
Number of Molecules:1
Biological Source:Dasyatis akajei
Ligand Molecules
Primary Citation
Structures of the deoxy and CO forms of haemoglobin from Dasyatis akajei, a cartilaginous fish.
Acta Crystallogr.,Sect.D 55 1291 1300 (1999)
PMID: 10393295 DOI: 10.1107/S0907444999005934

Abstact

The three-dimensional structures of the deoxy- and carbonmonoxyhaemoglobin (Hb) from Dasyatis akajei, a stingray, have been determined at 1.6 and 1.9 A resolution, respectively. This is one of the most distantly related vertebrate Hbs to human HbA. Both structures resemble the respective forms of HbA, indicating that the alpha2beta2-type tetramer and the mode of the quaternary structure change are common to Hbs of jawed vertebrates. Larger deviations between D. akajei Hb and human HbA are observed in various parts of the molecule, even in the E and F helices. Significant mutations and/or conformational changes are also observed around the haems, in the C-terminal region of the beta subunit, in the alpha1beta2 interface and in the organic phosphate-binding site of HbA. Despite these structural differences, the oxygen affinity, haem-haem interaction, Bohr effect and organic phosphate effect of D. akajei Hb are all only moderately reduced. Compared with human HbA, the overall r.m.s. deviation of main-chain atoms in the helical regions of bony fish Hbs is smaller than that of D. akajei Hb.

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Primary Citation of related structures