1CE6 image
Deposition Date 1999-03-17
Release Date 1999-03-26
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1CE6
Keywords:
Title:
MHC CLASS I H-2DB COMPLEXED WITH A SENDAI VIRUS NUCLEOPROTEIN PEPTIDE
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
(Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.27
R-Value Work:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (MHC CLASS I H-2DB HEAVY CHAIN)
Gene (Uniprot):H2-D1
Chain IDs:A
Chain Length:274
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:PROTEIN (HUMAN BETA-2 MICROGLOBULIN)
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:108
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PROTEIN (SENDAI VIRUS NUCLEOPROTEIN)
Gene (Uniprot):N
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:
Ligand Molecules
Primary Citation
Crystal structures of two H-2Db/glycopeptide complexes suggest a molecular basis for CTL cross-reactivity.
Immunity 10 63 74 (1999)
PMID: 10023771 DOI: 10.1016/S1074-7613(00)80007-2

Abstact

Two synthetic O-GlcNAc-bearing peptides that elicit H-2Db-restricted glycopeptide-specific cytotoxic T cells (CTL) have been shown to display nonreciprocal patterns of cross-reactivity. Here, we present the crystal structures of the H-2Db glycopeptide complexes to 2.85 A resolution or better. In both cases, the glycan is solvent exposed and available for direct recognition by the T cell receptor (TCR). We have modeled the complex formed between the MHC-glycopeptide complexes and their respective TCRs, showing that a single saccharide residue can be accommodated in the standard TCR-MHC geometry. The models also reveal a possible molecular basis for the observed cross-reactivity patterns of the CTL clones, which appear to be influenced by the length of the CDR3 loop and the nature of the immunizing ligand.

Legend

Protein

Chemical

Disease

Primary Citation of related structures