1C5B image
Deposition Date 1999-11-08
Release Date 2000-10-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1C5B
Keywords:
Title:
DECARBOXYLASE CATALYTIC ANTIBODY 21D8 UNLIGANDED FORM
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CHIMERIC DECARBOXYLASE ANTIBODY 21D8
Chain IDs:B (auth: H)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CHIMERIC DECARBOXYLASE ANTIBODY 21D8
Chain IDs:A (auth: L)
Chain Length:214
Number of Molecules:1
Biological Source:Mus musculus, Homo sapiens
Primary Citation
Catalysis of decarboxylation by a preorganized heterogeneous microenvironment: crystal structures of abzyme 21D8.
J.Mol.Biol. 302 1213 1225 (2000)
PMID: 11183784 DOI: 10.1006/jmbi.2000.4503

Abstact

Antibody 21D8 catalyzes the solvent-sensitive decarboxylation of 3-carboxybenzisoxazoles. The crystal structure of chimeric Fab 21D8 with and without hapten at 1.61 A and 2.10 A, respectively, together with computational analysis, shows how a melange of polar and non-polar sites are exploited to achieve both substrate binding and acceleration of a reaction normally facilitated by purely aprotic dipolar media. The striking similarity of the decarboxylase and a series of unrelated esterase antibodies also highlights the chemical versatility of structurally conserved anion binding sites and the relatively subtle changes involved in fine-tuning the immunoglobulin pocket for recognition of different ligands and catalysis of different reactions.

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Primary Citation of related structures