1BY2 image
Deposition Date 1998-10-23
Release Date 1999-05-18
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1BY2
Title:
STRUCTURE OF M2BP SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MAC-2 BINDING PROTEIN
Gene (Uniprot):LGALS3BP
Mutagens:N-TERMINAL APLA
Chain IDs:A
Chain Length:119
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Crystal structure of a scavenger receptor cysteine-rich domain sheds light on an ancient superfamily.
Nat.Struct.Biol. 6 228 232 (1999)
PMID: 10074941 DOI: 10.1038/6669

Abstact

Scavenger receptor cysteine-rich (SRCR) domains are found widely in cell surface molecules and in some secreted proteins, where they are thought to mediate ligand binding. We have determined the crystal structure at 2.0 A resolution of the SRCR domain of Mac-2 binding protein (M2BP), a tumor-associated antigen and matrix protein. The structure reveals a curved six-stranded beta-sheet cradling an alpha-helix. Structure-based sequence alignment demonstrates that the M2BP SRCR domain is a valid template for the entire SRCR protein superfamily. This allows an interpretation of previous mutagenesis data on ligand binding to the lymphocyte receptor CD6.

Legend

Protein

Chemical

Disease

Primary Citation of related structures