1BNL image
Deposition Date 1998-07-30
Release Date 1998-10-14
Last Version Date 2024-10-16
Entry Detail
PDB ID:
1BNL
Title:
ZINC DEPENDENT DIMERS OBSERVED IN CRYSTALS OF HUMAN ENDOSTATIN
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:COLLAGEN XVIII
Gene (Uniprot):COL18A1
Chain IDs:A, B, C, D
Chain Length:178
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Zinc-dependent dimers observed in crystals of human endostatin.
Proc.Natl.Acad.Sci.USA 95 10443 10448 (1998)
PMID: 9724722 DOI: 10.1073/pnas.95.18.10443

Abstact

The crystal structure of human endostatin reveals a zinc-binding site. Atomic absorption spectroscopy indicates that zinc is a constituent of both human and murine endostatin in solution. The human endostatin zinc site is formed by three histidines at the N terminus, residues 1, 3, and, 11, and an aspartic acid at residue 76. The N-terminal loop ordered around the zinc makes a dimeric contact in human endostatin crystals. The location of the zinc site at the amino terminus, immediately adjacent to the precursor cleavage site, suggests the possibility that the zinc may be involved in activation of the antiangiogenic activity following cleavage from the inactive collagen XVIII precursor or in the cleavage process itself.

Legend

Protein

Chemical

Disease

Primary Citation of related structures