1BK2 image
Deposition Date 1998-07-14
Release Date 1999-02-16
Last Version Date 2024-05-22
Entry Detail
PDB ID:
1BK2
Keywords:
Title:
A-SPECTRIN SH3 DOMAIN D48G MUTANT
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.32
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:A-SPECTRIN
Gene (Uniprot):SPTAN1
Mutagens:D48G
Chain IDs:A
Chain Length:57
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
Obligatory steps in protein folding and the conformational diversity of the transition state.
Nat.Struct.Biol. 5 721 729 (1998)
PMID: 9699637 DOI: 10.1038/1418

Abstact

We have analyzed the existence of obligatory steps in the folding reaction of the alpha-spectrin SH3 domain by mutating Asp 48 (D48G), which is at position i+3 of an isolated two-residue type II' beta-turn. Calorimetry and X-ray analysis show an entropic stabilizing effect resulting from local changes at the dihedral angles of the beta-turn. Kinetic analysis of D48G shows that this beta-turn is fully formed in the transition state, while there is no evidence of its formation in an isolated fragment. Introduction of several mutations in the D48G protein reveals that the local stabilization has not significantly altered the transition state ensemble. All these results, together with previous analysis of other alpha-spectrin and src SH3 mutants, indicate that: (i) in the folding reaction there could be obligatory steps which are not necessarily part of the folding nucleus; (ii) transition state ensembles in beta-sheet proteins could be quite defined and conformationally restricted ('mechanic folding nucleus'); and (iii) transition state ensembles in some proteins could be evolutionarily conserved.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback