1B5F image
Deposition Date 1999-01-06
Release Date 1999-01-13
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1B5F
Keywords:
Title:
NATIVE CARDOSIN A FROM CYNARA CARDUNCULUS L.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.25
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PROTEIN (CARDOSIN A)
Chain IDs:A, C
Chain Length:239
Number of Molecules:2
Biological Source:Cynara cardunculus
Polymer Type:polypeptide(L)
Molecule:PROTEIN (CARDOSIN A)
Chain IDs:B, D
Chain Length:87
Number of Molecules:2
Biological Source:Cynara cardunculus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
Crystal structure of cardosin A, a glycosylated and Arg-Gly-Asp-containing aspartic proteinase from the flowers of Cynara cardunculus L.
J.Biol.Chem. 274 27694 27701 (1999)
PMID: 10488111 DOI: 10.1074/jbc.274.39.27694

Abstact

Aspartic proteinases (AP) have been widely studied within the living world, but so far no plant AP have been structurally characterized. The refined cardosin A crystallographic structure includes two molecules, built up by two glycosylated peptide chains (31 and 15 kDa each). The fold of cardosin A is typical within the AP family. The glycosyl content is described by 19 sugar rings attached to Asn-67 and Asn-257. They are localized on the molecular surface away from the conserved active site and show a new glycan of the plant complex type. A hydrogen bond between Gln-126 and Manbeta4 renders the monosaccharide oxygen O-2 sterically inaccessible to accept a xylosyl residue, therefore explaining the new type of the identified plant glycan. The Arg-Gly-Asp sequence, which has been shown to be involved in recognition of a putative cardosin A receptor, was found in a loop between two beta-strands on the molecular surface opposite the active site cleft. Based on the crystal structure, a possible mechanism whereby cardosin A might be orientated at the cell surface of the style to interact with its putative receptor from pollen is proposed. The biological implications of these findings are also discussed.

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Primary Citation of related structures