1AVF image
Deposition Date 1997-09-16
Release Date 1998-02-25
Last Version Date 2024-10-30
Entry Detail
PDB ID:
1AVF
Title:
ACTIVATION INTERMEDIATE 2 OF HUMAN GASTRICSIN FROM HUMAN STOMACH
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.36 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GASTRICSIN
Gene (Uniprot):PGC
Chain IDs:B (auth: A), D (auth: J)
Chain Length:329
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:GASTRICSIN
Gene (Uniprot):PGC
Chain IDs:A (auth: P), C (auth: Q)
Chain Length:26
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural characterization of activation 'intermediate 2' on the pathway to human gastricsin.
Nat.Struct.Biol. 4 1010 1015 (1997)
PMID: 9406551 DOI: 10.1038/nsb1297-1010

Abstact

The crystal structure of an activation intermediate of human gastricsin has been determined at 2.4 A resolution. The human digestive enzyme gastricsin (pepsin C) is an aspartic proteinase that is synthesized as the inactive precursor (zymogen) progastricsin (pepsinogen C or hPGC). In the zymogen, a positively-charged N-terminal prosegment of 43 residues (Ala 1p-Leu 43p; the suffix 'p' refers to the prosegment) sterically prevents the approach of a substrate to the active site. Zymogen conversion occurs in an autocatalytic and stepwise fashion at low pH through the formation of intermediates. The structure of the non-covalent complex of a partially-cleaved peptide of the prosegment (Ala 1p-Phe 26p) with mature gastricsin (Ser 1-Ala 329) suggests an activation pathway that may be common to all gastric aspartic proteinases.

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Primary Citation of related structures