1ALY image
Deposition Date 1997-06-05
Release Date 1997-09-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
1ALY
Keywords:
Title:
CRYSTAL STRUCTURE OF HUMAN CD40 LIGAND
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.29
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CD40 LIGAND
Gene (Uniprot):CD40LG
Chain IDs:A
Chain Length:146
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
2 A crystal structure of an extracellular fragment of human CD40 ligand.
Structure 3 1031 1039 (1995)
PMID: 8589998 DOI: 10.1016/S0969-2126(01)00239-8

Abstact

BACKGROUND The CD40 ligand (CD40L) is a member of the tumor necrosis factor (TNF) family of proteins and is transiently expressed on the surface of activated T cells. The binding of CD40L to CD40, which is expressed on the surface of B cells, provides a critical and unique pathway of cellular activation resulting in antibody isotype switching, regulation of apoptosis, and B cell proliferation and differentiation. Naturally occurring mutations of CD40L result in the clinical hyper-IgM syndrome, characterized by an inability to produce immunoglobulins of the IgG, IgA and IgE isotypes. RESULTS We have determined the crystal structure of a soluble extracellular fragment of human CD40L to 2 A resolution and with an R factor of 21.8%. Although the molecule forms a trimer similar to that found for other members of the TNF family, such as TNF alpha and lymphotoxin-alpha, and exhibits a similar overall fold, there are considerable differences in several loops including those predicted to be involved in CD40 binding. CONCLUSIONS The structure suggests that most of the hyper-IgM syndrome mutations affect the folding and stability of the molecule rather than the CD40-binding site directly. Despite the fact that the hyper-IgM syndrome mutations are dispersed in the primary sequence, a large fraction of them are clustered in space in the vicinity of a surface loop, close to the predicted CD40-binding site.

Legend

Protein

Chemical

Disease

Primary Citation of related structures