ISDA

Deposition Date 1998-03-05

Release Date 1998-06-17

Last Version Date 2024-10-30

Entry Detail

PDB ID:

1A62

Keywords:

TRANSCRIPTION TERMINATION

Title:

CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE TRANSCRIPTIONAL TERMINATOR PROTEIN RHO

Biological Source:

Source Organism:

Escherichia coli BL21(DE3) (Taxon ID: 469008)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.55 Å

R-Value Free:

0.25

R-Value Work:

0.21

R-Value Observed:

0.21

Space Group:

P 1 21 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RHO
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)

UniProt ID:P0AG30 Pfam ID:PF07498, PF07497

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
MSE	A	MET	SELENOMETHIONINE

Primary Citation

Crystal structure of the RNA-binding domain from transcription termination factor rho.

Allison, T.J, Wood, T.C, Briercheck, D.M, Rastinejad, F, Richardson, J.P, Rule, G.S, Briercheck, D.M, Wood, T.C, Allison, T.J, Richardson, J.P, Rule, G.S, Briercheck, D.M, Allison, T.J, Richardson, J.P, Ellena, J.F, Wood, T.C, Rule, G.S.Show

Nat.Struct.Biol. 5 352 356 (1998)

PMID: 9586995 DOI: 10.1038/nsb0598-352

Abstact

Transcription termination factor rho is an ATP-dependent hexameric helicase found in most eubacterial species. The Escherichia coli rho monomer consists of two domains, an RNA-binding domain (residues 1-130) and an ATPase domain (residues 131-419). The ATPase domain is homologous to the beta subunit of F1-ATPase. Here, we report that the crystal structure of the RNA-binding domain of rho (rho130) at 1.55 A confirms that rho130 contains the oligosaccharide/oligonucleotide-binding (OB) fold, a five stranded beta-barrel. The beta-barrel of rho130 is also surprisingly similar to the N-terminal beta-barrel of F1 ATPase, extending the applicability of F1 ATPase as a structural model for hexameric rho.

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Primary Citation of related structures