Structural Complex
Chemical ID: A1IDZ
IUPAC Name: [[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)-5-selenophen-2-yl-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Formal Charge: 0
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]c(=O)n([C@H]2CCCO2)cc1-c1ccc[se]1
InChI: InChI=1S/C12H12N2O3Se/c15-11-8(9-3-2-6-18-9)7-14(12(16)13-11)10-4-1-5-17-10/h2-3,6-7,10H,1,4-5H2,(H,13,15,16)/t10-/m1/s1
InChI Key: PBSWKCRVSUEMPR-SNVBAGLBSA-N
Physiochemical Descriptor:
Formula: C13 H17 N2 O14 P3 Se
Molecular weight: 597.160
Hydrogen Bond Acceptor: 15
Hydrogen Bond Donor: 6
Rotatable Bonds: 14
Heavy Atoms: 33
Systematic name
Program Version Descriptor
OpenEye OEToolkits 2.0.7 [[(2~{R},3~{S},5~{R})-5-[2,4-bis(oxidanylidene)-5-selenophen-2-yl-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.06 InChI=1S/C13H17N2O14P3Se/c16-8-4-11(15-5-7(10-2-1-3-33-10)12(17)14-13(15)18)27-9(8)6-26-31(22,23)29-32(24,25)28-30(19,20)21/h1-3,5,8-9,11,16H,4,6H2,(H,22,23)(H,24,25)(H,14,17,18)(H2,19,20,21)/t8-,9?,11-/m0/s1
InChIKey InChI 1.06 IFHZFLUXRCNTJE-QCZWPSDZSA-N
SMILES_CANONICAL CACTVS 3.385 O[C@H]1C[C@H](O[C@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3[se]ccc3
SMILES CACTVS 3.385 O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3[se]ccc3
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 c1cc([se]c1)C2=CN(C(=O)NC2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
SMILES OpenEye OEToolkits 2.0.7 c1cc([se]c1)C2=CN(C(=O)NC2=O)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O