Structural Complex
Chemical ID: A1APE
IUPAC Name: (2R,3R,4R,5R)-3,4-diacetamido-5-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methoxy)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)
Formal Charge: 0
Type: non-polymer
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]3CC[C@@H](OCc4ccncc4)CO3)O2)c(=O)[nH]1
InChI: InChI=1S/C20H27N3O10P2/c24-17-7-10-23(20(25)22-17)18-3-1-16(31-18)13-30-34(26)33-35(27)32-19-4-2-15(12-29-19)28-11-14-5-8-21-9-6-14/h5-10,15-16,18-19,34-35H,1-4,11-13H2,(H,22,24,25)/t15-,16+,18-,19-/m1/s1
InChI Key: WRPXUTMVFMAKSQ-UKBAYJJMSA-N
Physiochemical Descriptor:
Formula: C26 H38 N5 O21 P3
Molecular weight: 849.522
Hydrogen Bond Acceptor: 23
Hydrogen Bond Donor: 10
Rotatable Bonds: 26
Heavy Atoms: 55
Systematic name
Program Version Descriptor
ACDLabs 12.01 (2R,3R,4R,5R)-3,4-diacetamido-5-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methoxy)oxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)
OpenEye OEToolkits 2.0.7 [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-3,4-diacetamido-5-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methoxy]oxan-2-yl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 O=C1C=CN(C(=O)N1)C1OC(COP(=O)(O)OP(=O)(O)OC2OCC(OCc3c(COP(=O)(O)O)cnc(C)c3O)C(NC(C)=O)C2NC(C)=O)C(O)C1O
InChI InChI 1.06 InChI=1S/C26H38N5O21P3/c1-11-21(35)15(14(6-27-11)7-48-53(39,40)41)8-46-16-9-47-25(20(29-13(3)33)19(16)28-12(2)32)51-55(44,45)52-54(42,43)49-10-17-22(36)23(37)24(50-17)31-5-4-18(34)30-26(31)38/h4-6,16-17,19-20,22-25,35-37H,7-10H2,1-3H3,(H,28,32)(H,29,33)(H,42,43)(H,44,45)(H,30,34,38)(H2,39,40,41)/t16-,17+,19-,20+,22+,23+,24+,25+/m0/s1
InChIKey InChI 1.06 ZBCWDGZSCCDTDU-LIKBFOATSA-N
SMILES_CANONICAL CACTVS 3.385 CC(=O)N[C@H]1[C@H](CO[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H]1NC(C)=O)OCc4c(O)c(C)ncc4CO[P](O)(O)=O
SMILES CACTVS 3.385 CC(=O)N[CH]1[CH](CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1NC(C)=O)OCc4c(O)c(C)ncc4CO[P](O)(O)=O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 Cc1c(c(c(cn1)COP(=O)(O)O)CO[C@H]2CO[C@@H]([C@@H]([C@H]2NC(=O)C)NC(=O)C)OP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=O)NC4=O)O)O)O
SMILES OpenEye OEToolkits 2.0.7 Cc1c(c(c(cn1)COP(=O)(O)O)COC2COC(C(C2NC(=O)C)NC(=O)C)OP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)N4C=CC(=O)NC4=O)O)O)O