Structural Complex
Chemical ID: PRD_002534
IUPAC Name: Inhibitor YBX-PHE-VAL-GLY-THR-THR-PHA-MAA-BIF-EME-NEH
Formal Charge: ?
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C(CCc1ccccc1)NCC(=O)N[C@H]1CCNC(=O)CNC(=O)[C@H](Cc2ccc(-c3ccccc3)cc2)NC(=O)CNC(=O)[C@H](Cc2ccccc2)NC(=O)CNC(=O)CNC1=O
InChI: InChI=1S/C47H53N9O9/c57-39(21-18-31-10-4-1-5-11-31)49-28-42(60)54-36-22-23-48-40(58)26-52-46(64)38(25-33-16-19-35(20-17-33)34-14-8-3-9-15-34)56-44(62)30-53-47(65)37(24-32-12-6-2-7-13-32)55-43(61)29-50-41(59)27-51-45(36)63/h1-17,19-20,36-38H,18,21-30H2,(H,48,58)(H,49,57)(H,50,59)(H,51,63)(H,52,64)(H,53,65)(H,54,60)(H,55,61)(H,56,62)/t36-,37-,38-/m0/s1
InChI Key: CNTFDWYCSQHKPM-QXUSSCGESA-N
Physiochemical Descriptor:
Formula: C64 H84 N10 O14 S
Molecular weight: 1249.475
Hydrogen Bond Acceptor: 15
Hydrogen Bond Donor: 11
Rotatable Bonds: 31
Heavy Atoms: 89
Systematic name
Program Version Descriptor
ACDLabs 12.01 N-[(ethylsulfanyl)acetyl]-L-phenylalanyl-N-{(3R,6R,9R,12R,15S,18R,21R)-12-benzyl-6-[([1,1'-biphenyl]-4-yl)methyl]-3-(2-carboxyethyl)-18-[(1R)-1-hydroxyethyl]-15-[(1S)-1-hydroxyethyl]-4,9,10-trimethyl-2,5,8,11,14,17,20-heptaoxo-1,4,7,10,13,16,19-heptaazacyclotricosan-21-yl}-L-valinamide
OpenEye OEToolkits 2.0.7 3-[(3~{S},6~{S},9~{S},12~{S},15~{S},18~{S})-21-[[(2~{S})-2-[[(2~{S})-2-(2-ethylsulfanylethanoylamino)-3-phenyl-propanoyl]amino]-3-methyl-butanoyl]amino]-4,9,10-trimethyl-15,18-bis[(1~{R})-1-oxidanylethyl]-2,5,8,11,14,17,20-heptakis(oxidanylidene)-12-(phenylmethyl)-6-[(4-phenylphenyl)methyl]-1,4,7,10,13,16,19-heptazacyclotricos-3-yl]propanoic acid
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 CCSCC(=O)NC(Cc1ccccc1)C(=O)NC(C(C)C)C(=O)NC1CCNC(=O)C(CCC(=O)O)N(C)C(=O)C(Cc2ccc(cc2)c2ccccc2)NC(=O)C(C)N(C)C(=O)C(Cc2ccccc2)NC(=O)C(NC(=O)C(NC1=O)C(C)O)C(C)O
SMILES_CANONICAL CACTVS 3.385 CCSCC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](C(C)C)C(=O)N[C@H]2CCNC(=O)[C@H](CCC(O)=O)N(C)C(=O)[C@H](Cc3ccc(cc3)c4ccccc4)NC(=O)[C@H](C)N(C)C(=O)[C@H](Cc5ccccc5)NC(=O)[C@@H](NC(=O)[C@@H](NC2=O)[C@@H](C)O)[C@@H](C)O
SMILES CACTVS 3.385 CCSCC(=O)N[CH](Cc1ccccc1)C(=O)N[CH](C(C)C)C(=O)N[CH]2CCNC(=O)[CH](CCC(O)=O)N(C)C(=O)[CH](Cc3ccc(cc3)c4ccccc4)NC(=O)[CH](C)N(C)C(=O)[CH](Cc5ccccc5)NC(=O)[CH](NC(=O)[CH](NC2=O)[CH](C)O)[CH](C)O
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 CCSCC(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](C(C)C)C(=O)NC2CCNC(=O)[C@@H](N(C(=O)[C@@H](NC(=O)[C@@H](N(C(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@@H](NC2=O)[C@@H](C)O)[C@@H](C)O)Cc3ccccc3)C)C)Cc4ccc(cc4)c5ccccc5)C)CCC(=O)O
SMILES OpenEye OEToolkits 2.0.7 CCSCC(=O)NC(Cc1ccccc1)C(=O)NC(C(C)C)C(=O)NC2CCNC(=O)C(N(C(=O)C(NC(=O)C(N(C(=O)C(NC(=O)C(NC(=O)C(NC2=O)C(C)O)C(C)O)Cc3ccccc3)C)C)Cc4ccc(cc4)c5ccccc5)C)CCC(=O)O
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