ISDA: 8TY9

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Atom Indices

Bond Indices

Highlight Substructure

Structural Complex

Chemical ID: GDP

IUPAC Name: GUANOSINE-5'-DIPHOSPHATE

Formal Charge: 0

Type: RNA LINKING

Substructure

Substruture Type: MurckoScaffold

SMILES: O=c1[nH]cnc2c1ncn2[C@H]1CCCO1

InChI: InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1

InChI Key: JBXHFRZBULGPSC-ZCFIWIBFSA-N

Physiochemical Descriptor:

Formula: C10 H15 N5 O11 P2

Molecular weight: 443.201

Hydrogen Bond Acceptor: 15

Hydrogen Bond Donor: 7

Rotatable Bonds: 12

Heavy Atoms: 28

Systematic name

Program	Version	Descriptor
ACDLabs	12.01	guanosine 5'-(trihydrogen diphosphate)
OpenEye OEToolkits	1.7.6	[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
InChI	InChI	1.03	InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKey	InChI	1.03	QGWNDRXFNXRZMB-UUOKFMHZSA-N
SMILES_CANONICAL	CACTVS	3.385	NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
SMILES	CACTVS	3.385	NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
SMILES_CANONICAL	OpenEye OEToolkits	1.7.6	c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
SMILES	OpenEye OEToolkits	1.7.6	c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N

Chemical Database Mapping