Structural Complex
Chemical ID: 5HU
IUPAC Name: 5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE
Formal Charge: 0
Type: DNA LINKING
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1ccn([C@H]2CCCO2)c(=O)[nH]1
InChI: InChI=1S/C8H10N2O3/c11-6-3-4-10(8(12)9-6)7-2-1-5-13-7/h3-4,7H,1-2,5H2,(H,9,11,12)/t7-/m1/s1
InChI Key: CWWIKVUHBBTKHC-SSDOTTSWSA-N
Physiochemical Descriptor:
Formula: C10 H15 N2 O9 P
Molecular weight: 338.208
Hydrogen Bond Acceptor: 10
Hydrogen Bond Donor: 5
Rotatable Bonds: 9
Heavy Atoms: 22
Systematic name
Program Version Descriptor
ACDLabs 10.04 2'-deoxy-5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate)
OpenEye OEToolkits 1.5.0 [(2R,3S,5R)-3-hydroxy-5-[5-(hydroxymethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1CO)C2OC(C(O)C2)COP(=O)(O)O
SMILES_CANONICAL CACTVS 3.341 OCC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES CACTVS 3.341 OCC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)CO)COP(=O)(O)O)O
SMILES OpenEye OEToolkits 1.5.0 C1C(C(OC1N2C=C(C(=O)NC2=O)CO)COP(=O)(O)O)O
InChI InChI 1.03 InChI=1S/C10H15N2O9P/c13-3-5-2-12(10(16)11-9(5)15)8-1-6(14)7(21-8)4-20-22(17,18)19/h2,6-8,13-14H,1,3-4H2,(H,11,15,16)(H2,17,18,19)/t6-,7+,8+/m0/s1
InChIKey InChI 1.03 WEBVWKFGRVLCNS-XLPZGREQSA-N
Chemical Database Mapping
Database Reference ID
DrugBank DB03846
ChEMBL CHEMBL1160818
PubChem 447206
ZINC ZINC000013538464