Structural Complex
Chemical ID: ME6
IUPAC Name: [(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Formal Charge: 1
Type: DNA linking
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH+]cccn1[C@H]1CCCO1
InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/p+1/t7-/m1/s1
InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-O
Physiochemical Descriptor:
Formula: C10 H17 N3 O7 P
Molecular weight: 322.232
Hydrogen Bond Acceptor: 9
Hydrogen Bond Donor: 4
Rotatable Bonds: 9
Heavy Atoms: 21
Systematic name
Program Version Descriptor
OpenEye OEToolkits 1.6.1 [(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES_CANONICAL CACTVS 3.352 C[N+]1=C(N)C=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C1=O
SMILES CACTVS 3.352 C[N+]1=C(N)C=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C1=O
SMILES_CANONICAL OpenEye OEToolkits 1.6.1 C[N+]1=C(C=CN(C1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)N
SMILES OpenEye OEToolkits 1.6.1 C[N+]1=C(C=CN(C1=O)C2CC(C(O2)COP(=O)(O)O)O)N
InChI InChI 1.03 InChI=1S/C10H16N3O7P/c1-12-8(11)2-3-13(10(12)15)9-4-6(14)7(20-9)5-19-21(16,17)18/h2-3,6-7,9,11,14H,4-5H2,1H3,(H2,16,17,18)/p+1/t6-,7+,9+/m0/s1
InChIKey InChI 1.03 SXDBYGVVLMSJDZ-LKEWCRSYSA-O
Chemical Database Mapping
Database Reference ID
PubChem 49867300
ZINC ZINC000103549611