Structural Complex
Chemical ID: PRD_002424
IUPAC Name: Darobactin 22
Formal Charge: ?
Type: peptide-like
Substructure
Substruture Type: MurckoScaffold
SMILES: O=C1CCc2c[nH]c3c(cccc23)O[C@@H]2c3c[nH]c4cc(ccc34)C[C@@H](C(=O)NCC(=O)NCCc3c[nH]c4ccccc34)NC(=O)CNC(=O)[C@H]2NC(=O)CN1
InChI: InChI=1S/C41H41N9O7/c51-33-11-9-23-17-46-37-26(23)5-3-7-32(37)57-39-28-18-44-30-14-22(8-10-27(28)30)15-31(49-35(53)21-48-41(56)38(39)50-36(54)20-45-33)40(55)47-19-34(52)42-13-12-24-16-43-29-6-2-1-4-25(24)29/h1-8,10,14,16-18,31,38-39,43-44,46H,9,11-13,15,19-21H2,(H,42,52)(H,45,51)(H,47,55)(H,48,56)(H,49,53)(H,50,54)/t31-,38-,39+/m0/s1
InChI Key: HUAASXJAAQGEGU-JTLDFEHUSA-N
Physiochemical Descriptor:
Formula: C53 H67 N15 O11
Molecular weight: 1090.193
Hydrogen Bond Acceptor: 12
Hydrogen Bond Donor: 17
Rotatable Bonds: 21
Heavy Atoms: 79
Systematic name
Program Version Descriptor
OpenEye OEToolkits 3.1.0.0 3-[(5~{R},17~{R},20~{R},23~{S},26~{S},29~{S})-29-[[(2~{R})-5-[[azaniumylidene(azanyl)methyl]amino]-1-[[(2~{S})-3-(1~{H}-indol-3-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamoyl]-17-azanyl-20-(2-azanyl-2-oxidanylidene-ethyl)-26-[(1~{S})-1-oxidanylethyl]-18,21,24,27-tetrakis(oxidanylidene)-6-oxa-2,13,19,22,25,28-hexazahexacyclo[29.3.1.0^{4,34}.0^{5,23}.0^{7,12}.0^{11,15}]pentatriaconta-1(35),3,7,9,11,14,31,33-octaen-30-yl]propylazanium
Chemical Descriptors
Type Program Version Descriptor
InChI InChI 1.06 InChI=1S/C53H65N15O11/c1-24(69)41-49(74)67-43(50(75)63-35(11-6-16-59-53(57)58)47(72)65-38(52(77)78)19-27-21-60-34-10-3-2-7-28(27)34)29(9-5-15-54)25-13-14-31-32(23-61-36(31)18-25)45-44(51(76)66-41)68-48(73)37(20-40(56)70)64-46(71)33(55)17-26-22-62-42-30(26)8-4-12-39(42)79-45/h2-4,7-8,10,12-14,18,21-24,29,33,35,37-38,41,43-45,60-62,69H,5-6,9,11,15-17,19-20,54-55H2,1H3,(H2,56,70)(H,63,75)(H,64,71)(H,65,72)(H,66,76)(H,67,74)(H,68,73)(H,77,78)(H4,57,58,59)/p+2/t24-,29+,33+,35+,37+,38-,41-,43-,44-,45+/m0/s1
InChIKey InChI 1.06 VGHHVOGSGVMNKK-BTPZIDHDSA-P
SMILES_CANONICAL CACTVS 3.385 C[C@H](O)[C@@H]1NC(=O)[C@H]2NC(=O)[C@@H](CC(N)=O)NC(=O)[C@H](N)Cc3c[nH]c4c(O[C@@H]2c5c[nH]c6cc(ccc56)[C@@H](CCC[NH3+])[C@H](NC1=O)C(=O)N[C@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](Cc7c[nH]c8ccccc78)C(O)=O)cccc34
SMILES CACTVS 3.385 C[CH](O)[CH]1NC(=O)[CH]2NC(=O)[CH](CC(N)=O)NC(=O)[CH](N)Cc3c[nH]c4c(O[CH]2c5c[nH]c6cc(ccc56)[CH](CCC[NH3+])[CH](NC1=O)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](Cc7c[nH]c8ccccc78)C(O)=O)cccc34
SMILES_CANONICAL OpenEye OEToolkits 2.0.7 C[C@@H]([C@H]1C(=O)N[C@@H](C(c2ccc3c(c2)[nH]cc3[C@@H]4[C@@H](C(=O)N1)NC(=O)[C@H](NC(=O)[C@@H](Cc5c[nH]c6c5cccc6O4)N)CC(=O)N)CCC[NH3+])C(=O)N[C@H](CCCNC(=[NH2+])N)C(=O)N[C@@H](Cc7c[nH]c8c7cccc8)C(=O)O)O
SMILES OpenEye OEToolkits 2.0.7 CC(C1C(=O)NC(C(c2ccc3c(c2)[nH]cc3C4C(C(=O)N1)NC(=O)C(NC(=O)C(Cc5c[nH]c6c5cccc6O4)N)CC(=O)N)CCC[NH3+])C(=O)NC(CCCNC(=[NH2+])N)C(=O)NC(Cc7c[nH]c8c7cccc8)C(=O)O)O