Structural Complex
Chemical ID: GDG
IUPAC Name: GDP-ALPHA-D-GLUCOSE
Formal Charge: 0
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1nc[nH]c2c1ncn2[C@H]1CC[C@@H](CO[PH](=O)O[PH](=O)O[C@@H]2CCCCO2)O1
InChI: InChI=1S/C15H22N4O8P2/c20-15-13-14(16-8-17-15)19(9-18-13)11-5-4-10(25-11)7-24-28(21)27-29(22)26-12-3-1-2-6-23-12/h8-12,28-29H,1-7H2,(H,16,17,20)/t10-,11+,12+/m0/s1
InChI Key: DAYKFFOVCHXBSL-QJPTWQEYSA-N
Physiochemical Descriptor:
Formula: C16 H25 N5 O16 P2
Molecular weight: 605.341
Hydrogen Bond Acceptor: 20
Hydrogen Bond Donor: 10
Rotatable Bonds: 18
Heavy Atoms: 39
Systematic name
Program Version Descriptor
ACDLabs 12.01 [(2R,3S,4R,5R)-5-(2-amino-6-oxo-3,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)
OpenEye OEToolkits 2.0.4 [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 12.01 C1(C(O)C(C(C(O1)CO)O)O)OP(OP(OCC4C(C(C(n2cnc3c2NC(=NC3=O)N)O4)O)O)(O)=O)(O)=O
InChI InChI 1.03 InChI=1S/C16H25N5O16P2/c17-16-19-12-6(13(28)20-16)18-3-21(12)14-10(26)8(24)5(34-14)2-33-38(29,30)37-39(31,32)36-15-11(27)9(25)7(23)4(1-22)35-15/h3-5,7-11,14-15,22-27H,1-2H2,(H,29,30)(H,31,32)(H3,17,19,20,28)/t4-,5-,7-,8-,9+,10-,11-,14-,15-/m1/s1
InChIKey InChI 1.03 MVMSCBBUIHUTGJ-LRJDVEEWSA-N
SMILES_CANONICAL CACTVS 3.385 NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@@H](O)[C@H]3O)c2N1
SMILES CACTVS 3.385 NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O)c2N1
SMILES_CANONICAL OpenEye OEToolkits 2.0.4 c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O[C@@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O)NC(=NC2=O)N
SMILES OpenEye OEToolkits 2.0.4 c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)CO)O)O)O)O)O)NC(=NC2=O)N
Chemical Database Mapping
Database Reference ID
ChEMBL CHEMBL228228
PubChem 135398625
ChEBI 62254
ZINC ZINC000008215895
HMDB HMDB0003351